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Characterization of fibroblasts during LSCC progression. A UMAP plot of fibroblast subsets colored by cell type. B Dot plots showing the expression of canonical marker genes across each fibroblast subset. C Bar plots showing the frequency (left) and proportion (right) of each fibroblast subset in different tissues. D Changes in infiltration proportion of POSTN + fibroblasts (above) and CFD + fibroblasts (below) in different tissues. E Heatmap displaying pathway activities of each fibroblast subset, quantified as normalized enrichment scores (NES) from Gene Set Enrichment Analysis (GSEA). F Pathway enrichment in POSTN + versus CFD + fibroblasts, assessed by GSVA score (two-sided unpaired limma-moderated t-test). G Kaplan-Meier curve showing disease-free survival (DFS) in the GSE27020 cohort, stratified by the optimal cut-off for POSTN + fibroblast infiltration. H Representative immunofluorescence (IF) staining images of POSTN + fibroblasts <t>(COL1A1</t> + POSTN + double positive) in LSCC, VCL, and non-malignant samples. Scale bar = 50 μm.
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Characterization of fibroblasts during LSCC progression. A UMAP plot of fibroblast subsets colored by cell type. B Dot plots showing the expression of canonical marker genes across each fibroblast subset. C Bar plots showing the frequency (left) and proportion (right) of each fibroblast subset in different tissues. D Changes in infiltration proportion of POSTN + fibroblasts (above) and CFD + fibroblasts (below) in different tissues. E Heatmap displaying pathway activities of each fibroblast subset, quantified as normalized enrichment scores (NES) from Gene Set Enrichment Analysis (GSEA). F Pathway enrichment in POSTN + versus CFD + fibroblasts, assessed by GSVA score (two-sided unpaired limma-moderated t-test). G Kaplan-Meier curve showing disease-free survival (DFS) in the GSE27020 cohort, stratified by the optimal cut-off for POSTN + fibroblast infiltration. H Representative immunofluorescence (IF) staining images of POSTN + fibroblasts (COL1A1 + POSTN + double positive) in LSCC, VCL, and non-malignant samples. Scale bar = 50 μm.

Journal: International Journal of Biological Sciences

Article Title: Single-cell Deciphering of the Progression Trajectories of the Tumor Ecosystem in Laryngeal Squamous Cell Carcinoma

doi: 10.7150/ijbs.129291

Figure Lengend Snippet: Characterization of fibroblasts during LSCC progression. A UMAP plot of fibroblast subsets colored by cell type. B Dot plots showing the expression of canonical marker genes across each fibroblast subset. C Bar plots showing the frequency (left) and proportion (right) of each fibroblast subset in different tissues. D Changes in infiltration proportion of POSTN + fibroblasts (above) and CFD + fibroblasts (below) in different tissues. E Heatmap displaying pathway activities of each fibroblast subset, quantified as normalized enrichment scores (NES) from Gene Set Enrichment Analysis (GSEA). F Pathway enrichment in POSTN + versus CFD + fibroblasts, assessed by GSVA score (two-sided unpaired limma-moderated t-test). G Kaplan-Meier curve showing disease-free survival (DFS) in the GSE27020 cohort, stratified by the optimal cut-off for POSTN + fibroblast infiltration. H Representative immunofluorescence (IF) staining images of POSTN + fibroblasts (COL1A1 + POSTN + double positive) in LSCC, VCL, and non-malignant samples. Scale bar = 50 μm.

Article Snippet: The sections were incubated overnight at 4 °C with the respective primary antibodies, including anti-collagen type I (COL1A1) (#TA422261M, OriGene, USA), anti-osteopontin (SPP1) (#ab9377, Abcam, USA), anti-wide spectrum cytokeratin (Pan-CK) (#TA385310M, OriGene), anti-periostin (POSTN) (#TA804575M, OriGene), and anti-CD68 (#66231-2-lg, Proteintech, China), followed by washing in phosphate-buffered saline (PBS).

Techniques: Expressing, Marker, Immunofluorescence, Staining